Jo. Wu et al., DNA sequence-dependent differences in TATA-binding protein-induced DNA bending in solution are highly sensitive to osmolytes, J BIOL CHEM, 276(18), 2001, pp. 14623-14627
The complex formed between the TATA-binding protein (TBP) and the "TATA box
" of eukaryotic class II promoters is the foundation for assembly of the co
mplex to which RNA polymerase II is ultimately recruited. TBP binds product
ively to canonical and diverse variant TATA sequences with > 100-fold diffe
rences in transcription efficiency. Go-crystals of canonical sequences and
ttl variant sequences bound to various TBP molecules all have similar to 80
degrees bends. In contrast, the bend angles for TBP.TATA complexes in solu
tion, derived from distance distributions, are similar to 80 degrees for a
canonical sequence but range from 30 degrees to 62 degrees for five variant
sequences (1). We show in this study that the osmolytes used to crystalliz
e TBP.TATA complexes induce profound increases in the DNA bends of two tran
scriptionally active TBP-bound variant sequences to a common angle of simil
ar to 80 degrees but have little effect on a transcriptionally inactive var
iant. The effect of osmolyte on the TBP-induced DNA bend of a variant TATA
box sequence is also manifest in the kinetics of association, demonstrating
a functional consequence of an osmolyte-induced structural change.