This paper presents a system for computer-assisted quantification of axe-so
matic boutons at motoneuron cell-surface membranes, Different immunohistoch
emical stains can be used to prepare tissue of the spinal cord. Based on mi
crographs displaying single neurons, a finite element balloon model has bee
n applied to determine the exact location of the cell membrane, A synaptic
profile is extracted next to the cell membrane and normalized with referenc
e to the intracellular brightness. Furthermore, a manually selected referen
ce cell is used to normalize settings of the microscope as well as variatio
ns in histochemical processing for each stain. Thereafter, staining, homoge
neity, and allocation of boutons are determined automatically from the syna
ptic profiles. The system is evaluated by applying the coefficient of varia
tion (C-v) to repeated measurements of a quantity. Based on 1856 motoneuron
al images acquired from four animals with three stains, 93% of the images a
re analyzed correctly. The others were rejected, based on process protocols
. Using only rabbit anti-synaptophysin as primary antibody, the correctness
increases above 96%, C-v values are below 3%, 5%, and 6% for all measures
with respect to stochastic optimization, cell positioning, and a large rang
e of microscope settings, respectively, A sample size of about 100 is requi
red to validate a significant reduction of staining in motoneurons below a
hemi-section (Wilcoxon rank-sum test, alpha = 0.05, beta = 0.9), Our system
yields statistically robust results from light micrographs. In future, it
is hoped that this system will substitute for the expensive and time-consum
ing analysis of spinal cord injury at the ultra-structural level, such as b
y manual interpretation of nonoverlapping electron micrographs.