A three-dimensional model of the 5-HT1A receptor in man was constructe
d by molecular-modelling techniques and used to study the molecular in
teractions of a series of buspirone analogues with the 5-HT1A receptor
by molecular-mechanical-energy minimization and molecular-dynamics si
mulations. The receptor has seven trans-membrane a helices (TMHs) orga
nized according to the electron-density-projection map of visual rhodo
psin, and includes all loops between TMHs and the N- and C-terminal pa
rts. The best fit between the buspirone analogues and the receptor mod
el was obtained with the quinolinyl part of the ligand molecules inter
acting with amino acids in TMH6, the imide group interacting with amin
o acids in TMH2, TMH3 and TMH7, and the carbonyl groups hydrogen-bonde
d with Ser86 and Ser393. The ligand-binding rank order deduced from th
e experimentally determined inhibition constant was reproduced by calc
ulation of receptor-binding energies of the buspirone analogues. The m
odels suggest that steric hindrance and repulsive forces between the r
eceptor and the imide group of the buspirone analogues are the most im
portant determinants of ligand-binding affinity for discriminating bet
ween these ligands.