We have re-examined the roles of nucA and nin, in the transformation of Bac
illus subtilis as conflicting accounts have been presented concerning the i
mportance of these genes for transformation. The present report demonstrate
s that nucA deficiency lowers the rate of DNA transport and that NucA is ne
eded for the double-strand cleavage of transforming DNA, probably acting di
rectly as an endonuclease. A relative paucity of DNA termini, resulting fro
m the absence of this endonuclease activity, most probably accounts for the
decreased transport rate. NucA is a bitopic integral membrane protein, wit
h its C-terminus external to the membrane where it is appropriately located
to effect the cleavage of bound transforming DNA. We have also investigate
d the roles of the known competence genes in the DNA processing that accomp
anies transformation in B. subtilis. The genes that are required for DNA tr
ansport (comEA, comEC and comFA) are also required for the degradation of t
he non-transforming strand that accompanies internalization, but comEC and
comFA are not needed for the double-strand cleavage that occurs external to
the cell membrane.