Crohn's disease(1,2) and ulcerative colitis, the two main types of chronic
inflammatory bowel disease, are multifactorial conditions of unknown aetiol
ogy. A susceptibility locus for Crohn's disease has been mapped(3) to chrom
osome 16. Here we have used a positional-cloning strategy, based on linkage
analysis followed by linkage disequilibrium mapping, to identify three ind
ependent associations for Crohn's disease: a frameshift variant and two mis
sense variants of NOD2, encoding a member of the Apaf-1/Ced-4 superfamily o
f apoptosis regulators that is expressed in monocytes. These NOD2 variants
alter the structure of either the leucine-rich repeat domain of the protein
or the adjacent region. NOD2 activates nuclear factor NF-kB; this activati
ng function is regulated by the carboxy-terminal leucine-rich repeat domain
, which has an inhibitory role and also acts as an intracellular receptor f
or components of microbial pathogens. These observations suggest that the N
OD2 gene product confers susceptibility to Crohn's disease by altering the
recognition of these components and/or by over-activating NF-kB in monocyte
s, thus documenting a molecular model for the pathogenic mechanism of Crohn
's disease that can now be further investigated.