How can the genome of Drosophila melanogaster contain fewer genes than the
undoubtedly simpler organism Caenorhabditis elegans? The answer must lie wi
thin their proteomes. It is becoming clear that alternative splicing has an
extremely important role in expanding protein diversity and might therefor
e partially underlie the apparent discrepancy between gene number and organ
ismal complexity. Alternative splicing can generate more transcripts from a
single gene than the number of genes in an entire genome. However, for the
vast majority of alternative splicing events, the functional significance
is unknown. Developing a full catalog of alternatively spliced transcripts
and determining each of their functions will be a major challenge of the up
coming proteomic era.