Considerable controversy surrounds the importance of inbreeding in nat
ural populations. The rate of natural inbreeding and the influences of
behavioral mechanisms that serve to promote or minimize inbreeding (e
.g., philopatry vs. dispersal) are poorly understood. We studied inbre
eding and social structuring of a population of black-railed prairie d
ogs (Cynomys ludovicianus) to assess the influence of dispersal and ma
ting behavior on patterns of genetic variation. We examined 15 years o
f data on prairie dogs, including survival and reproduction, social be
havior, pedigrees, and allozyme alleles. Pedigrees revealed mean inbre
eding coefficients (F) of 1-2%. A breeding-group model that incorporat
ed details of prairie dog behavior and demography was used to estimate
values of fixation indices (Estimates). Model predictions were consis
tent with the minimization of inbreeding within breeding groups (''cot
eries,'' asymptotic F-IL = -0.18) and random mating within the subpopu
lation (''colony,'' asymptotic F-IS = 0.00). Estimates from pedigrees
(mean F-IL = -0.23, mean F-is = 0.00) and allozyme data (mean F-lL = -
0.21, mean F-IS = -0.01) were consistent with predictions of the model
. The breeding-group model, pedigrees, and allozyme data showed remark
ably congruent results, and indicated strong genetic structuring withi
n the colony (F-LS = 0.16, 0.19 and 0.17, respectively). We concluded
that although inbreeding occurred in the colony, the rate of inbreedin
g was strongly minimized at the level of breeding groups, but not at t
he subpopulation level. The behavioral mechanisms most important to th
e minimization of inbreeding appeared to be patterns of male-biased di
spersal of both subadults and adults, associated with strong philopatr
y of females. Incest avoidance also occurred, associated with recognit
ion of close kin via direct social learning within the breeding groups
.