M. Garcia-viloca et al., Inclusion of quantum-mechanical vibrational energy in reactive potentials of mean force, J CHEM PHYS, 114(22), 2001, pp. 9953-9958
Classical molecular dynamics and Monte Carlo simulations typically exclude
quantum effects on the vibrations of reactants and transition states, and t
his may lead to significant errors in the computed potential of mean force.
To correct this deficiency, a simple approximate procedure is proposed for
the inclusion of quantum-mechanical vibrational energy in the computation
of reactive potentials of mean force in condensed phases. The method is ill
ustrated by a hydrogen atom transfer and a proton transfer reaction in wate
r, in particular, the 1,5-sigmatropic shift in malonaldehyde and the interm
olecular proton shift between ammonium ion and ammonia in an encounter comp
lex. In both cases, quantum-mechanical vibrational energy makes significant
contributions by reducing the free energy of activation by 2 to 3 kcal/mol
. This finding has important implications in developing empirical potential
functions for the study of enzyme reactions, and it is essential to quanti
ze vibrational energy in the computed potential of mean force and free ener
gy of activation in order to compare simulations quantitatively with experi
ment. (C) 2001 American Institute of Physics.