We evaluated genetic variation in Gapper's red-backed vole (Clethrionomys g
apperi) at 2 microsatellite DNA loci and related our results to the biogeog
raphic history of the southern Appalachians. To investigate population gene
tic structuring within relictual habitats, 222 individuals were sampled fro
m 9 sites, including 2 populations suspected to have been isolated since th
e Wisconsin glacial retreat. Genetic structuring was evident among the majo
rity of the sampled populations. Unbiased estimates of exact P-values revea
led significant allelic differentiation between 15 of 36 population pairs.
Overall estimates of F-ST and rho were 0.07 and 0.10, respectively, indicat
ing moderate genetic subdivision. Overall gene flow was estimated indirectl
y with 3 methods and was 1.13-4.44 migrants/generation. The hypothesized is
olation of 2 islandlike populations at Massanutten and Peaks of Otter was s
upported by our data and was most apparent in the Massanutten population, w
here genetic diversity was low compared with all other populations. The uni
que genetic structure of the population at Massanutten also may be related
to habitat disturbances. Genetic patterns observed in relict populations of
the red-backed vole may provide insight into genetic structuring of codist
ributed boreal populations in the southern Appalachians.