E. Haskell et al., Population density methods for large-scale modelling of neuronal networks with realistic synaptic kinetics: cutting the dimension down to size, NETWORK-COM, 12(2), 2001, pp. 141-174
Population density methods provide promising time-saving alternatives to di
rect Monte Carlo simulations of neuronal network activity, in which one tra
cks the state of thousands of individual neurons and synapses. A population
density method has been found to be roughly a hundred times faster than di
rect simulation for various test networks of integrate-and-fire model neuro
ns with instantaneous excitatory and inhibitory post-synaptic conductances.
In this method, neurons are grouped into large populations of similar neur
ons. For each population, one calculates the evolution of a probability den
sity function (PDF) which describes the distribution of neurons over state
space. The population firing rate is then given by the total flux of probab
ility across the threshold voltage for firing an action potential. Extendin
g the method beyond instantaneous synapses is necessary for obtaining accur
ate results, because synaptic kinetics play an important role in network dy
namics. Embellishments incorporating more realistic synaptic kinetics for t
he underlying neuron model increase the dimension of the PDF, which was one
-dimensional in the instantaneous synapse case. This increase in dimension
causes a substantial increase in computation time to find the exact PDF, de
creasing the computational speed advantage of the population density method
over direct Monte Carlo simulation. We report here on a one-dimensional mo
del of the PDF for neurons with arbitrary synaptic kinetics. The method is
more accurate than the mean-held method in the steady state, where the mean
-field approximation works best, and also under dynamic-stimulus conditions
. The method is much faster than direct simulations. Limitations of the met
hod are demonstrated, and possible improvements are discussed.