A solvable model of secondary structure formation in random hetero-polymers

Citation
Ns. Skantzos et al., A solvable model of secondary structure formation in random hetero-polymers, J PHYS A, 34(21), 2001, pp. 4437-4457
Citations number
21
Categorie Soggetti
Physics
Journal title
JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL
ISSN journal
03054470 → ACNP
Volume
34
Issue
21
Year of publication
2001
Pages
4437 - 4457
Database
ISI
SICI code
0305-4470(20010601)34:21<4437:ASMOSS>2.0.ZU;2-X
Abstract
We propose and solve a simple model describing secondary structure formatio n in random hetero-polymers. It describes monomers with a combination of on e-dimensional short-range interactions (representing steric forces and hydr ogen bonds) and infinite-range interactions (representing polarity forces). We solve our model using a combination of mean-field and random-field tech niques, leading to phase diagrams exhibiting second-order transitions betwe en folded, partially folded and unfolded states, including regions where fo lding depends on initial conditions. Our theoretical results, which are in excellent agreement with numerical simulations, lead to an appealing physic al picture of the folding process: the polarity forces drive the transition to a collapsed state, the steric forces introduce monomer specificity and the hydrogen bonds stabilize the conformation by damping the frustration-in duced multiplicity of states.