Identification of a compound short tandem repeat stretch in the 5 '-upstream region of the cholecystokinin gene, and its association with panic disorder but not with schizophrenia

The cholecystokinin gene (CCK) is thought to play a role in the pathogenesi s of both panic disorder(1-4) and schizophrenia.(5) In this study, we have extended the 5'-upstream sequence of the CCK gene, and identified a compoun d short tandem repeat (STR), located approximately -2.2 to -1.8 kb from the cap site. This STR was found to be polymorphic with ten different allele l engths. Case-control studies using 73 panic patients, 305 schizophrenics an d 252 controls showed a significant allelic association with panic disorder (P = 0.025), but not with schizophrenia. Dividing the STR alleles into thr ee classes according to length, Long (L), Medium (M) and Short (S), produce d strong genotypic (MM) (nominal P = 0.0014) and allelic (M) (nominal P = 0 .0079) associations with panic disorder. Screening the newly extended promo ter region detected not only the previously identified -36C>T and -188A>G s ingle nucleotide polymorphisms (SNPs) but a new rare SNP, -345G>C. Neither of the former two SNPs showed significant association with either panic dis order or schizophrenia. Haplotypic distributions of the STR and SNPs -188 a nd -36 were significantly different between panic samples and controls (P = 0.0003). These findings suggest that the novel STR or a nearby variant may confer susceptibility to the development of panic disorder.