In order to allow critical evaluation of the interrelationships between the
three sponge classes, and to resolve the question of mono- or paraphyly of
sponges (Porifera), we used the polymerase chain reaction (PCR) to amplify
almost the entire nucleic acid sequence of the 18S rDNA from several hexac
tinellid, demosponge and calcareous sponge species. The amplification produ
cts were cloned, sequenced and then aligned with previously reported sequen
ces from other sponges and nonsponge metazoans and variously distant outgro
ups, and trees were constructed using both neighbour-joining and maximum pa
rsimony methods. Our results suggest that sponges are paraphyletic, the Cal
carea being more related to monophyletic Eumetazoa than to the siliceous sp
onges (Demospongiae, Hexactinellida). These results have important implicat
ions for our understanding of metazoan origins, because they suggest that t
he common ancestor of Metazoa was a sponge. They also have consequences for
basal metazoan classification, implying that the phylum Porifera should be
abandoned. Our results support the upgrading of the calcareous sponge clas
s to the phylum level.