In order to reveal the genetic subdivision within population of common wild
rice Oryza rufipogon Griff., allozyme analysis was conducted using 22 loci
on a typical population from Yunnan Province, China. Non-random distributi
on of genotypes and/or genetic variability was found among three subpopulat
ions, and the result was further demonstrated by considerable genetic diffe
rentiation observed (F-ST=0.206) within the population. Microhabitat select
ion may not be an important factor in shaping intra-population genetic stru
cture, and restricted gene flow (N-m=0.964 <1) and genetic drift act togeth
er towards a genetic subdivision within the population. This genetic subdiv
ision may enhance inbreeding and will ultimately lead to genetic depletion
within the predominantly outcrossing (t=0.830) perennial population, and th
erefore, more attention should be paid to the conservation and genetic mana
gement of the population.