SNARE proteins are key regulators of membrane fusion and are proposed to di
ctate the specificity with which particular vesicles fuse with particular t
arget organelles. On intracellular organelles that serve as targets for tra
nsport vesicles, organelle-specific syntaxins form heterodimers with either
SNAP-23 or its recently described homolog SNAP-29. We have performed a var
iety of in vitro and in vivo binding assays in an attempt to determine whet
her SNAP-23 and SNAP-29 differ in their ability to form binary SNARE comple
xes with different intracellular syntaxins. While SNAP-23 preferentially bi
nds to plasma membrane-localized syntaxins, SNAP-29 binds Ito both plasma m
embrane and intracellular syntaxins equally well. Furthermore, binding to S
NAP-29 augments the ability of syntaxin to bind to vesicle-associated SNARE
s and the presence of vesicle SNAREs dramatically increases SNAP-29 binding
to syntaxin. These data suggest that SNAP-23 preferentially regulates plas
ma membrane-vesicle fusion events while SNAP-29 plays a role in the mainten
ance of various intracellular protein trafficking pathways.