Excess of Mg2+ ions is known to inhibit the soluble inorganic pyrophosphata
ses (PPases). In contrast, the mutant Escherichia coli inorganic pyrophosph
atase Asp42-->Asn is three times more active than native and retains its ac
tivity at high Mg2+ concentration. In this paper, another two mutant varian
ts with Asp42 replaced by Ala or Glu were investigated to characterize the
role of Asp42 in catalysis. pH-independent kinetic parameters of MgPPi hydr
olysis and the dissociation constants for the activating and inhibitory Mg2
+ ions were calculated. It was shown that Mg2+ inhibition of MgPPi hydrolys
is by native PPase exhibited uncompetitive kinetics under the saturating su
bstrate concentration. All three substitutions of Asp42 lead to a sharp dec
rease of inhibitory Mg2+ affinity to the enzyme. These findings allow deter
mination of the sites of inhibitory and substrate Mg2+ ions binding to PPas
e. Common features of these mutants allow the conclusion that the function
of Asp42 is to accurately coordinate the residues implicated in the substra
te and the inhibitory Mg2+ ion binding to PPase active site. Structural ana
lysis of PPase complexed with Mg2+ compared with PPase complexed with Mn2and reaction products confirms this supposition.