Our perspective on the origin and evolution of the Hox gene cluster changed
with the discovery of the ParaHox gene cluster in amphioxus (Cephalochorda
ta; Branchiostoma floridae) (Brooke et al. 1998). The ParaHox gene cluster
contains three homeobox genes (Gsx, Xlox, Cdx) and is deduced to be a paral
ogue (evolutionary sister) of the Hox gene cluster. If this deduction is co
rrect, animals with Hox genes should also possess ParaHox genes. Paradoxica
lly, however, only deuterostome animals have thus far been shown to contain
all three ParaHox genes. Here we report the cloning of all three ParaHox g
enes from each of two species within the phylum Sipuncula. This is the firs
t demonstration of all three ParaHox genes in the genome of a protostome an
imal and confirms that the common ancestor of protostomes and deuterostomes
possessed all three ParaHox genes. Furthermore, it implies that the ParaHo
x genes are of sufficient functional importance in both protostomes and deu
terostomes that they have all been conserved in both of these bilaterian cl
ades.