Protein kinases and phosphatases play an important role in modulating synap
tic transmission. The synaptic protein rabphilin associates with synaptic v
esicles through the small GTPase Rab3A, binds Ca2+ and phospholipids, and i
nteracts with cytoskeletal elements, yet its function remains controversial
. In this study, we have generated phosphospecific antibodies and studied t
he developmental, subcellular, and brain distribution of rabphilin phosphor
ylated at serine-234 and serine-274. Our results show that phosphorabphilin
is present in vivo under basal conditions in a specific subset of synapses
. The phosphorylated rabphilin is abundant in the cerebellum, midbrain, and
medulla; phosphorabphilin is specifically enriched in the climbing fiber s
ynapses of the cerebellar cortex. Its developmental profile reveals a sharp
and transient increase at approximately postnatal day 16, a period critica
l for the activity-dependent pruning of supernumerary climbing fibers in th
e cerebellum. We propose that the phosphorylation of rabphilin regulates ne
uronal activity through development and in a synapse-specific manner.