Long-term freshwater transport is an important factor affecting estuarine a
quatic ecosystems. In this study, a primitive equation, prognostic, three-d
imensional, hydrodynamic model was applied to Apalachicola Bay, Florida, fo
r the summer and fall seasons of 1993. In response to the river freshwater
discharge, tide, and wind forces, the model simulations were used to charac
terize the long-term freshwater transport processes in the bay. Analysis of
spatial distributions of seasonal average salinity and currents shows that
the long-term freshwater transport was strongly affected by the forcing fu
nctions of wind and density gradient in the bay. Average freshwater input w
as approximately the same in the summer and fall seasons of 1993. However,
in the summer season, more freshwater moved to the east direction due to th
e predominant wind from the west, while in the fall season more freshwater
moved to the west in response to the wind primarily from the east. The wate
r column was strongly stratified near the river mouth, and it gradually cha
nged to well mixing near the ocean boundaries. Vertical stratification in t
he bay changed due to wind-induced mixing and mass transport. Due to the de
nsity gradient effect, surface residual currents carrying fresher water wer
e in the direction from the river toward the Gulf, while the bottom residua
l currents with saltier water entered the bay from the Gulf of Mexico.