We find budding yeast Rad9 in two distinct, large, and soluble complexes in
cell extracts. The larger (greater than or equal to 850 kDa) complex, foun
d in nondamaged cells, contains hypophosphorylated Rad9, whereas the smalle
r (560 kDa) complex, which forms after DNA damage, contains hyperphosphoryl
ated Rad9 and Rad53. This smaller Rad9 complex is capable of catalyzing pho
sphorylation and release of active Rad53 kinase, a process requiring the ki
nase activity of Rad53. However, Mec1 and Tel1 are no longer required once
the 560 kDa complex has been formed. We propose a model whereby Mec1/Tel1-d
ependent hyperphosphorylation of Rad9 results in formation of the smaller R
ad9 complex and recruitment of Rad53. This complex then catalyzes activatio
n of Rad53 by acting as a scaffold that brings Rad53 molecules into close p
roximity, facilitating Rad53 in trans autophosphorylation and subsequent re
lease of activated Rad53.