In the present study, biofilms were grown in rotating annular bioreactors w
ith river water as inoculum and sole source of nutrients. The herbicides at
razine and diclofop methyl were applied to the bioreactors, while an identi
cal reactor acted as a control. Biofilm structure was visualized using spec
ific fluorescent probes in conjunction with confocal laser scanning microsc
opy. The concentration of both herbicides in the bulk water phase followed
the pattern of application. Atrazine and metabolites were detected in biofi
lm samples using direct insertion probe tandem mass spectrometry (DIP-MS/MS
) and only trace levels were detected after the addition phase. Monoclonal
antibody (MAb) studies indicated that sorption of atrazine was associated w
ith a unique microcolony type. In contrast, diclofop and metabolites reache
d a maximum level in the biofilm at the end of the addition phase and persi
sted in the biofilm. Experiments with C-14-labeled atrazine and diclofop me
thyl indicated that mineralization of these compounds to CO2 (<1%) occurred
in the river biofilms. Thus, both herbicides were sorbed and metabolized b
y the river biofilm community and detected in biofilms when they were not d
etected in the bulk water phase. These results indicate that biofilms and s
pecific community members may act as a sink for herbicides, and that this s
hould be taken into account in terms of both sampling and studies of the en
vironmental chemodynamics of contaminants.