The major histocompatibility complex (MHC) was initially defined as the gen
etic locus encoding the Class I and Class II highly polymorphic cell surfac
e antigens that are now known to present antigen to matched sets of T cell
receptors. Genes for several diverse complement components, specifically Bf
, C2, and C4 were found between the Class I and II genes, in a region later
dubbed Class III. More recently, several genes have been described that ar
e encoded in the telomeric end of the Class III region and that appear to b
e involved in both global and specific inflammatory responses. Due to this
commonality of function this gene-rich region was dubbed Class IV, and incl
udes the TNF family, AIF1, and HSP70. The genes of the Class III and Class
IV regions are sufficiently divergent in sequence and structure so that clu
stering is not explicable in terms of gene duplication or divergence. We pr
esent some of the newer pertinent information and puzzling features of the
genes embraced in the Class IV region and discuss possible roles in specifi
c autoimmune diseases linked to this region.