A cDNA clone was selected as a candidate for the catalytic subunit of phosp
ho-pyruvate dehydrogenase phosphatase (PDP) by screening a Zea mays express
ed sequence tag database with the bovine PDP deduced amino acid sequence. B
oth strands of the cDNA were completely sequenced. The maize clone contains
an open reading frame of 1098 base pairs that encodes a polypeptide of 401
27 Da, ZMPP2. The deduced amino acid sequence of ZMPP2 contains the five PP
2C signature domains, as does PDP. However, the expression pattern of ZMPP2
, determined by reverse transcriptase-polymerase chain reaction, was differ
ent from those of the maize pyruvate dehydrogenase Ela subunit and pyruvate
dehydrogenase kinase. Additionally, the predicted subcellular location of
ZMPP2 is cytoplasmic, while the pyruvate dehydrogenase complex, regulated b
y reversible phosphorylation, is mitochondrial. Thus, ZMPP2 is a PP2C-type
protein phosphatase related to but distinct from PDP.