Previous work suggested qualitatively different effects of neurotrophin 3 (
NT-3) in cochlear innervation patterning in different null mutants. We now
show that all NT-3 null mutants have a similar phenotype and lose all neuro
ns in the basal turn of the cochlea. To understand these longitudinal defic
its in neurotrophin mutants, we have compared the development of the defici
t in the NT-3 mutant to the spatial-temporal expression patterns of brain-d
erived neurotrophic factor (BDNF) and NT-3, using lacZ reporters in each ge
ne and with expression of the specific neurotrophin receptors, trkB and trk
C. In the NT-3 mutant, almost normal numbers of spiral ganglion neurons for
m, but fiber outgrowth to the basal turn is eliminated by embryonic day (E)
13.5. Most neurons are lost between E13.5 and E15.5. During the period pre
ceding apoptosis, NT-3 is expressed in supporting cells, whereas BDNF is ex
pressed mainly in hair cells, which become postmitotic in an apical to basa
l temporal gradient. During the period of neuronal loss, BDNF is absent fro
m the basal cochlea, accounting for the complete loss of basal turn neurons
in the NT-3 mutant. The spatial gradients of neuronal loss in these two mu
tants appear attributable to spatial-temporal gradients of neurotrophin exp
ression. Our immunocytochemical data show equal expression of their recepto
rs, TrkB and TrkC, in spiral sensory neurons and thus do not relate to the
basal turn loss. Mice in which NT-3 was replaced by BDNF show a qualitative
normal pattern of innervation at E13.5. This suggests that the pattern of
expression of neurotrophins rather than their receptors is essential for th
e spatial loss of spiral sensory neurons in NT-3 null mutants.