Nef proteins from human immunodeficiency virus type 1 (HIV-1) and simian im
munodeficiency virus (SM have been found to associate with an active cellul
ar serine/threonine kinase designated Nef-associated kinase (Nak). The exac
t identity of Nak remains controversial, with two recent studies indicating
that Nak may be either Pak1 or Pak2. In this study, we investigated the hy
pothesis that such discrepancies arise from the use of different Nef allele
s or different cell types by individual investigators. We first confirm tha
t Pak2 but not Pak1 is cleaved by caspase 3 in vitro and then demonstrate t
hat Nak is caspase 3 sensitive, regardless of Nef allele or cell type used.
We tested nef alleles from three lentiviruses (HIV-1 SF2, HIV-1 NL4-3, and
SIVmac239) and used multiple cell lines of myeloid, lymphoid, and nonhemat
opoietic origin to evaluate the identity of Nak. We demonstrate that ectopi
cally expressed Pak2 can substitute for Nak, while ectopically expressed Pa
k1 cannot. We then show that Nef specifically mediates the robust activatio
n of ectopically expressed Pak2, directly demonstrating that Nef regulates
Pak2 activity and does not merely associate with activated Pak2. We report
that most of the active Pak2 is found bound to Nef, although a fraction is
not. In contrast, only a small amount of Nef is found associated with Pak2.
We conclude that Nak is Pak2 and that Nef specifically mediates Pak2 activ
ation in a low-abundance complex. These results will facilitate both the el
ucidation of the role of Nef in pathogenesis and the development of specifi
c inhibitors of this highly conserved function of Nef.