Cytochrome b (cyt-b) is widely used in molecular phylogenetic studies of ve
rtebrate, but not invertebrate, taxa. To determine whether this situation i
s an historical accident or reflects the utility of cyt-b, we compared the
abilities of cyt-b, COI, and one nuclear ribosomal gene region (D1 of 28S)
to recover intergeneric relationships within the tiger moth tribes Ctenuchi
ni and Euchromiini. Additionally, we compared the rate of sequence and amin
o acid evolution of cyt-b across insects. Cytochrome b had the same level o
f sequence variation and A/T bias as COI, but was less useful for recoverin
g intergeneric relationships. The total evidence tree casts doubt on the tr
aditional taxonomy of the group. For the class Insecta, we found that funct
ional conservation of amino acids occurs for the same regions as those foun
d in vertebrates with the exception of Mallophaga (lice). Lice have an acce
lerated rate of nonsynonymous substitutions. Accelerated rate of cyt-b nucl
eotide and amino acid evolution in Apidae (bees) may be correlated with inc
reased metabolic rates associated with facultative endothermy (= heterother
my). (C) 2001 Academic Press.