We recently demonstrated the existence of specific patterns of somatic mito
chondrial DNA (mtDNA) mutations in several cancers. Here we sought to ident
ify the presence of mtDNA mutations in prostate cancer an their paired PIN
lesions. The D-loop region, 16S rRNA, and the NADH subunits of complex I we
re sequenced to identify mtDNA mutations in 16 matched PIN lesions and prim
ary prostate cancers. Twenty mtDNA mutations were detected in the tumor tis
sue of three patients. Identical mutations were also identified in the PIN
lesion from one patient. This patient with multiple point mutations also ha
rbored a high frequency of microsatellite instability (MSI-H) in nuclear mo
nonucleotide repeat markers. Remarkably, identical mutations were also dete
cted in all (3/3) matched urine and plasma samples obtained from these pati
ents. Although mitochondrial mutations are less common in prostate adenocar
einoma, they occur early in cancer progression and they can be detected in
bodily fluids of early stage disease patients. The identification of MtDNA
mutations may complement other early detection approaches for prostate canc
er.