In this study we characterized the prokaryotic microbiota associated with t
he reef-building coral Montastraea franksi in a culture-independent manner
by sequencing 16S rDNAs. The majority of the bacteria identified by this me
thod were novel species and belonged to a wide variety of microbial groups,
with cyanobacteria and Lx-proteobacteria being the most abundant. In contr
ast, the bacteria cultured from the same M. franksi samples were closely re
lated to previously described bacteria and consisted mostly of) gamma -prot
eobacteria. These results show that the microbial diversity associated with
corals can be greatly underestimated when relying exclusively on culture-b
ased methods. Our analyses also showed that one a-proteobacteria species wa
s present in all M. franksi samples isolated from five reefs separated by u
p to 10 km. This finding is suggestive of a specific microbe-coral associat
ion.