Estuaries and coastal wetlands are critical transition zones (CTZs) that li
nk land, freshwater habitats, and the sea. CTZs provide essential ecologica
l functions, including decomposition, nutrient cycling, and nutrient produc
tion, as well as regulation of fluxes of nutrients, water, particles, and o
rganisms to and from land, rivers, and the ocean. Sediment-associated biota
are integral to these functions. Functional groups considered essential to
CTZ processes include heterotrophic bacteria and fungi, as well as many be
nthic invertebrates. Key invertebrate functions include shredding, which br
eaks down and recycles organic matter; suspension feeding, which collects a
nd transports sediments across the sediment-water interface; and bioturbati
ng, which moves sediment into or out of the seabed. In addition, macrophyte
s regulate many aspects of nutrient, particle, and organism dynamics above-
and belowground. Animals moving within or through CTZs are vectors that tr
ansport nutrients and organic matter across terrestrial, freshwater, and ma
rine interfaces. Significant threats to biodiversity within CTZs are posed
by anthropogenic influences; eutrophication, nonnutrient pollutants, specie
s invasions, overfishing, habitat alteration, and climate change affect spe
cies richness or composition in many coastal environments. Because biotic d
iversity in marine CTZ sediments is inherently low whereas their functional
significance is great, shifts in diversity are likely to be particularly i
mportant. Species introductions (from invasion) or loss (from overfishing o
r habitat alteration) provide evidence that single-species changes can have
overt, sweeping effects on CTZ structure and function. Certain species may
be critically important to the maintenance of ecosystem functions in CTZs
even though at present there is limited empirical evidence that the number
of species in CTZ sediments is critical. We hypothesized that diversity is
indeed important to ecosystem function in marine CTZs because high diversit
y maintains positive interactions among species (facilitation and mutualism
), promoting stability and resistance to invasion or other forms of disturb
ance. The complexity of interactions among species and feedbacks with ecosy
stem functions suggests that comparative (mensurative) and manipulative app
roaches will be required to elucidate the role of diversity in sustaining C
TZ functions.