We present a comparison between serology and genetic detection of three bac
terial pathogens causing lower respiratory tract infection (LRI). We evalua
ted serology and PCR for the detection of Mycoplasma pneumoniae, Bordetella
pertussis and Chlamydia pneumoniae from 1712 nasopharyngeal and serum samp
les. For 856 nasopharyngeal samples, average PCR time was 7.2 days, the par
allel serum samples was 13 days. Automated extraction of nucleic acids redu
ces average PCR time to 6.7 days.