Different species of bat can be morphologically very similar. In order to e
stimate the amount of cryptic diversity among European bats we screened the
intra- and interspecific genetic variation in 26 European vespertilionid b
at species. We sequenced the DNA of subunit 1 of the mitochondrial protein
NADH dehydrogenase (ND1) from several individuals of a species, which were
sampled in a variety of geographical regions. A phylogeny based on the mito
chondrial (mt) DNA data is in good agreement with the current classificatio
n in the family. Highly divergent mitochondrial lineages were found in two
taxa, which differed in at least 11% of their ND1 sequence. The two mtDNA l
ineages in Plecotus austriacus correlated with the two subspecies Plecotus
austriacus austriacus and Plecotus austriacus kolombatovici. The two mtDNA
lineages in Myotis mystacinus were partitioned among two morphotypes. The e
vidence for two new bat species within Europe is discussed. Convergent adap
tive evolution might have contributed to the morphological similarity among
distantly related species if they occupy similar ecological niches. Closel
y related species may differ in their ecology but not necessarily in their
morphology. On the other hand, two morphologically clearly different specie
s (Eptesicus serotinus and Eptesicus nilssonii) were found to be geneticall
y very similar. Neither morphological nor mitochondrial DNA sequence analys
is alone can be guaranteed to identify species.