Parallel-hat tempering: A Monte Carlo search scheme for the identificationof low-energy structures

Citation
Y. Zhang et J. Skolnick, Parallel-hat tempering: A Monte Carlo search scheme for the identificationof low-energy structures, J CHEM PHYS, 115(11), 2001, pp. 5027-5032
Citations number
21
Categorie Soggetti
Physical Chemistry/Chemical Physics
Journal title
JOURNAL OF CHEMICAL PHYSICS
ISSN journal
00219606 → ACNP
Volume
115
Issue
11
Year of publication
2001
Pages
5027 - 5032
Database
ISI
SICI code
0021-9606(20010915)115:11<5027:PTAMCS>2.0.ZU;2-Y
Abstract
A new parallel-hat tempering algorithm has been developed for Monte Carlo s imulations, in which a composite ensemble of noninteracting replicas of the molecule system at different temperatures is simulated, and the Markov pro cess of each replica is driven by a hatlike weight factor with exponentiall y enhanced probability in both low- and high-energy regions. To test the al gorithm, the methodology is applied to a homopolymeric protein chain locate d on a face-centered cubic lattice. We demonstrate that the ability of the current approach to search for low-energy molecule structures is significan tly better than other Monte Carlo techniques found in the literature. (C) 2 001 American Institute of Physics.