The centromeric DNA of fission yeast is arranged with a central core flanke
d by repeated sequences. The centromere-associated proteins, Mis6p and Cnp1
p (SpCENP-A), associate exclusively with central core DNA, whereas the Swi6
protein binds the surrounding repeats. Here, electron microscopy and immun
ofluorescence light microscopy reveal that the central core and flanking re
gions occupy distinct positions within a heterochromatic domain. An "anchor
" structure containing the Ndc80 protein resides between this heterochromat
ic domain and the spindle pole body. The organization of centromere-associa
ted proteins in fission yeast is reminiscent of the multilayered structures
of human kinetochores, indicating that such domain structure is conserved
in eukaryotes.