We have assembled data from Caenorhabditis elegans DNA microarray experimen
ts involving many growth conditions, developmental stages, and varieties of
mutants. Co-regulated genes were grouped together and visualized in a thre
e-dimensional expression map that displays correlations of gene expression
profiles as distances in two dimensions and gene density in the third dimen
sion. The gene expression map can be used as a gene discovery toot to ident
ify genes that are co-regulated with known sets of genes (such as heat shoc
k, growth control genes, germ line genes, and so forth) or to uncover previ
ously unknown genetic functions (such as genomic instability in mates and s
perm caused by specific transposons).