AN AB-INITIO COMPUTATIONAL MOLECULAR-ORBITAL STUDY OF RADICAL, PROTONATED RADICAL (RADICAL-CATION), AND CARBOCATION SPECIES THAT HAVE BEEN PROPOSED IN MECHANISMS FOR THE TRANSFER PROCESS IN THE ENZYME COENZYMEB-12-CATALYZED DEHYDRATION OF 1,2-DIHYDROXYETHANE
P. George et al., AN AB-INITIO COMPUTATIONAL MOLECULAR-ORBITAL STUDY OF RADICAL, PROTONATED RADICAL (RADICAL-CATION), AND CARBOCATION SPECIES THAT HAVE BEEN PROPOSED IN MECHANISMS FOR THE TRANSFER PROCESS IN THE ENZYME COENZYMEB-12-CATALYZED DEHYDRATION OF 1,2-DIHYDROXYETHANE, Journal of the American Chemical Society, 119(30), 1997, pp. 7065-7074
The mechanism of action of the enzyme diol dehydrase has variously bee
n suggested to involve a radical, a protonated radical (radical cation
), or a carbocation in the apparent transfer of HO from one carbon ato
m to the other to give acetaldehyde and water. This adenosylcobalamin-
requiring B-12 enzyme catalyzes dehydration of 1,2-dihydroxyethane. It
s active site is buried within a hydrophobic cavity. Each of the three
possibilities are examined by ab initio molecular orbital calculation
s. Total molecular energies have been calculated with full geometry op
timization at the MP2(FC)/6-31G level and, in addition, single point
energies using the MP2(FC)/6-311++G* basis set. Vibrational frequenci
es were also calculated. Transfer of an HO group within a HOCH-CH2OH i
nverted left perpendicular (.) radical (postulated to be formed by the
initial reaction of the diol with the deoxyadenosyl radical via a bri
dge structure) was ruled out because the activation energy is much too
high in relation to the observed rate constant for the enzyme reactio
n. A carbocation mechanism also presents problem, quite apart from the
necessity of postulating some acceptor for the electron from the HOCH
-CH2OH inverted left perpendicular (.) radical. In principle acetafdeh
yde could be formed via the 2,2-dihydroxyeth-1-yl cation which was fou
nd to undergo a spontaneous 1,2-hydride ion shift, giving protonated a
cetic acid. But, although the 1,2-dihydroxyethyl cation (otherwise pro
tonated glycolaldehyde) is well established as a stable species, the i
ntermediary bridge structure could not be found. The radical cation HO
CH-CH2OH2 inverted left perpendicular (.+), formed by proton transfer
from an active-site group, was found to be inherently unstable, transf
orming without activation into a stable hydrogen-bonded hydrate of the
anti-vinyl alcohol radical cation, H2O ... CH2 inverted left perpendi
cular (.+). Deprotonation and H-atom transfer (from AdCH(3)) were then
found to give stable hydrogen-bonded hydrates of the formylmethyl rad
ical, protonated acetaldehyde, and acetaldehydeitself. The ultimate fo
rmation of acetaIdehyde and water can be attributed either to the diss
ociation of acetaldehyde hydrate or the prior dissociation of theformy
lmethyl radical hydrate followed by the H-atom transfer step. Because
H2O is already formed as a discrete entity in the initial protonation
step and no transfer of a bonded HO, H2O,-or H2O+ group from one carbo
n atom to the other actually occurs, this series of reactions may be t
ermed a ''predissociation'' mechanism. The overall proton transfer and
the formation of water are complicated interconnected processes. A co
nsideration of whether or not the cobalt participates in one of the la
ter reaction steps is undenvay.