To elucidate further the role, in normal development and in disease pathoge
nesis, of TFAP2B, a transcription factor expressed in neuroectoderm, we stu
died eight patients with Char syndrome and their families. Four novel mutat
ions were identified, three residing in the basic domain, which is responsi
ble for DNA binding, and a fourth affecting a conserved PY motif in the tra
nsactivation domain. Functional analyses of the four mutants disclosed that
two, R225C and R225S, failed to bind target sequence in vitro and that all
four had dominant negative effects when expressed in eukaryotic cells. Our
present findings, combined with data about two previously identified TFAP2
B mutations, show that dominant negative effects consistently appear to be
involved in the etiology of Char syndrome. Affected individuals in the fami
ly with the PY motif mutation, P62R, had a high prevalence of patent ductus
arteriosus but had only mild abnormalities of facial features and no appar
ent hand anomalies, a phenotype different from that associated with the fiv
e basic domain mutations. This genotype-phenotype correlation supports the
existence of TFAP2 coactivators that have tissue specificity and are import
ant for ductal development but less critical for craniofacial and limb deve
lopment.