The variety of methods used to identify the structural determinants of anio
n selectivity in the cystic fibrosis transmembrane conductance regulator Cl
- channel has made it difficult to assemble the data into a coherent framew
ork that describes the three-dimensional structure of the pore. Here, we co
mpare the relative importance of sites previously studied and identify new
sites that contribute strongly to anion selectivity. We studied Cl- and sub
stitute anions in oocytes expressing, wild-type cystic fibrosis transmembra
ne conductance regulator or 12-pore-domain mutants to determine relative pe
rmeability and relative conductance for 9 monovalent anions and 1 divalent
anion. The data indicate that the region of strong discrimination resides b
etween T338 and S341 in transmembrane 6, where mutations affected selectivi
ty between Cl- and both large and small anions. Mutations further toward th
e extracellular end of the pore only strongly affected selectivity between
Cl- and larger anions. Only mutations at S341 affected selectivity between
monovalent and divalent anions. The data are consistent with a narrowing of
the pore between the extracellular end and a constriction near the middle
of the pore.