Squamous cell carcinoma of the head and neck exhibit a highly variable pict
ure of chromosomal aberrations. In the present study the clearly defined an
atomical region of the tongue was analyzed for potentially specific pattern
s of chromosomal alterations. Fresh tumor samples from 18 patients afflicte
d by squamous cell carcinoma of the tongue constituted the clinical basis o
f the present investigation. The tumor samples were analyzed on the basis o
f comparative genomic hybridization (CGH), a molecular cytogenetic FISH-app
roach. Gains in DNA copy numbers were detected as the predominant imbalance
on chromosomes 7q (9/18), 3q (48/18), 16p (7/18) and 20q (7/18). The regio
ns of minimal overlap on these chromosomes were mapped to 7q11.2q11.3 and 3
q26. A conspicuous finding was the frequent detection of amplifications in
the 7q11 region. Gains in the 7q region have been rarely reported in CGH st
udies of tumors derived from different regions of the head and neck. Amplif
ications on 7q could thus be specifically linked with the tongue region and
could correlate with specific clinical factors of this tumor entity.