The specificity of ubiquitin-mediated protein degradation with regards to t
he selection of substrates to be polyubiquitinated has only been determined
rather recently. Substrate targeting by the N-end rule and HECT (homology
to E6AP carboxyl terminus) domain ubiquitin ligases occurs through substrat
e-specific binding domains. In contrast, the SCF complex recruits substrate
s through a substrate adaptor protein, the F-box subunit. Despite evidence
showing that Cdc20 and Cdh1 bind and activate the anaphase-promoting comple
x (APC) in a substrate-specific manner, there is no evidence that the activ
ating protein and substrate interact directly; hence, no clear model exists
for the mechanism of APC activation or recruitment of substrates. We show
here that the activators Cdc20 and Cdh1 can associate with substrates via t
heir N termini. In the absence of APC, Cdc20 and Cdh1 bind substrates refle
cting Cdc20-APC and Cdh1-APC specificity. The N termini of Cdc20 and Cdh1 p
rovide specificity functionally, as demonstrated by the generation of activ
e chimeras that display the specificity corresponding to their N termini. T
hus, Cdc20 and Cdh1 act as both substrate recognition and activating module
s for APC.