A fully mechanistic model based on diffusion equations for gas transport in
a flooded rice system is presented. The model has transport descriptions f
or various compartments in the water-saturated soil and within the plant. P
lant parameters were estimated from published data and experiments independ
ent of the validation experiment. An independent experiment is described in
which the diffusion coefficient of sulfurhexafluoride (SF6) in water-satur
ated soil was determined. The model was validated by experiments in which t
ransport of SF6 through soil and plant was monitored continuously by photoa
coustics. The independent default settings could reasonably predict gas rel
ease dynamics in the soil-plant system. Calculated transmissivities and con
centration gradients at the default settings show that transport within the
soil was the most limiting step in this system, which explains why most ga
ses are released via plant-mediated transport. The root-shoot interface rep
resents the major resistance for gas transport within the plant. A sensitiv
ity analysis of the model showed that gas transport in such a system is hig
hly sensitive to the estimation of the diffusion coefficient of SF6, which
helps to understand diel patterns found for greenhouse gas emissions, and t
o the root distribution with depth. This can be understood from the calcula
ted transmissivities. The model is less sensitive to changes in the resista
nce at the root-shoot interface and in the root fraction active in gas exch
ange. The model thus provides an understanding of limiting steps in gas tra
nsport, but quantitative predictions of in situ gas transport rates will be
difficult given the plasticity of root distribution.