Studies of genetically engineered flies and mice have revealed the role tha
t orthologs of the human LIM homeobox LHX4 have in the control of motor-neu
ron-identity assignment and in pituitary development. Remarkably, these mou
se strains, which bear a targeted modification of Lhx4 in the heterozygous
state, are asymptomatic, whereas homozygous animals die shortly after birth
. Nevertheless, we have isolated the human LHX4 gene, as well as the corres
ponding cDNA sequence, to test whether it could be involved in developmenta
l defects of the human pituitary region. LHX4, which encodes a protein 99%
identical to its murine counterpart, consists of six coding exons and spans
>45 kb of the q25 region of chromosome 1. We report a family with an LHX4
germline splice-site mutation that results in a disease phenotype character
ized by short stature and by pituitary and hindbrain (i.e., cerebellar) def
ects in combination with abnormalities of the sella turcica of the central
skull base. This intronic mutation, which segregates in a dominant and full
y penetrant manner over three generations, abolishes normal LHX4 splicing a
nd activates two exonic cryptic splice sites, thereby predicting two differ
ent proteins deleted in their homeodomain sequence. These findings, which e
lucidate the molecular basis of a complex Mendelian disorder, reveal the fu
ndamental pleiotropic role played by a single factor that tightly coordinat
es brain development and skull shaping during head morphogenesis.