Human vaults are intracellular ribonucleoprotein particles believed to be i
nvolved in multidrug resistance. The complex consists of a major vault prot
ein (MVP), two minor vault proteins (VPARP and TEP1), and several small unt
ranslated RNA molecules. Three human vault RNA genes (HVG1-3) have been des
cribed, and a fourth was found in a homology search (HVG4). In the literatu
re only the association of hvg1 with vaults was shown in vivo. However, in
a yeast three-hybrid screen the association of hvg1, hvg2, and hvg4 with TE
P1 was demonstrated. In this study we investigated the expression and vault
association of different vault RNAs in a variety of cell lines, including
pairs of drug-sensitive and drug-resistant cells. HVG1-3 are expressed in a
ll cell lines examined, however, none of the cell lines expressed HVG4. Thi
s probably is a consequence of the absence of essential external polymerase
III promoter elements. The bulk of the vault RNA associated with vaults wa
s hvg1. Interestingly, an increased amount of hvg3 was bound to vaults isol
ated from multidrug-resistant cell lines. Our findings suggest that vaults
bind the RNA molecules with different affinities in different situations. T
he ratio in which the vault RNAs are associated with vaults might be of fun
ctional importance.