A method has been developed for the separation and identification of conjug
ated fatty acid isomers as distinct from conjugated linoleic acid (CLA). Ch
eese fat was extracted using n-hexane and converted into fatty acid methyl
esters (FAMEs) with potassium methylate. Because of the low concentration o
f conjugated fatty acids isomers, a prefractionation was performed to enhan
ce and to separate these isomers from CLA and other fatty acids common in c
heese fat. The separation was carried out by preparative reversed phase (RP
)-HPLC. The FAMEs were detected with a UV detector at a wavelength of 208 n
m, so all FAMEs were detectable, including non-conjugated ones. All prefrac
tions were analysed on a high polarity GC column fitted with a split-splitl
ess injector and a flame ionisation detector. In addition prefraction 2, wh
ich contained linolenic acid and arachidonic acid, as well as their isomers
, was fractionated by silver ion (Ag+)-HPLC. Two columns were used in serie
s with 0.1 % acetonitrile in n-hexane as isocratic mobile phase. All conjug
ated compounds were detected with a photodiode array detector at 234 nm and
the spectrum from 200 to 400 nm was recorded. Thus characteristic spectra
of conjugated dienes and conjugated trienes could be distinguished. For ide
ntification of the position of double bonds, each fraction collected after
Ag -HPLC was converted into 4,4-dimethyloxazoline (DMOX) derivatives. These
derivatives were analysed by gas chromatography-electron impact ionization
mass spectrometry (GC-EI-MS). With the proposed method, 13 conjugated isom
ers of arachidonic acid (CAA) and six conjugated isomers of linolenic acid
(CLnA) could be identified with regard to the position of their double bond
s.