Screening peptide libraries is a proven strategy for identifying inhibitors
of protein-ligand interactions. Compounds identified in these screens ofte
n bind to their targets with low affinities. When the target protein is pre
sent at a high density on the surface of cells or other biological surfaces
, it is sometimes possible to increase the biological activity of a weakly
binding ligand by presenting multiple copies of it on the same molecule. We
isolated a peptide from a phage display library that binds weakly to the h
eptameric cell-binding subunit of anthrax toxin and prevents the interactio
n between cell-binding and enzymatic moieties. A molecule consisting of mul
tiple copies of this nonnatural peptide, covalently linked to a flexible ba
ckbone, prevented assembly of the toxin complex in vitro and blocked toxin
action in an animal model. This result demonstrates that protein-protein in
teractions can be inhibited by a synthetic, polymeric, polyvalent inhibitor
in vivo.