In fungi, fatty acids are biosynthesized by large multifunctional enzyme co
mplexes, the fatty acid synthases (FASs), which catalyze chain assembly in
an iterative manner. Many fungal secondary metabolites contain fatty acid m
oieties, and it is often unclear whether they are recruited from primary me
tabolism or are biosynthesized de novo by secondary metabolic FASs. The mos
t convincing evidence of such a dedicated FAS comes from the biosyntheses o
f aflatoxin (AF) and sterigmatocystin (ST) in certain species of the filame
ntous fungus Aspergillus. Incorporation studies in AF and genetic analyses
of ST and AF biosynthesis strongly suggest that their biosyntheses be-in wi
th the production of a C-6 fatty acid by a specialized FAS. The genes encod
ing the alpha (hexA) and beta (hexB) subunits of this hexanoate synthase (H
exS) from the AF pathway in Aspergillus parsiticus SU-1 were cloned and bot
h their gDNAs and cDNAs were sequenced and their transcriptional ends analy
zed. Translated amino acid sequences are predicted to result in proteins of
181.3 and 210.5 k-Da, for HexA and HexB, respectively. Comparison of the H
exA and HexB sequences with those of the ST FAS subunits and primary metabo
lic FASs indicated that the secondary metabolic enzymes are members of a we
ll-defined subclass of the FAS family. Phylogenetic predictions and an anal
ysis of GC-bias in AF and ST pathway genes compared with primary metabolic
Aspergillus genes were used as a basis to propose a route for the evolution
of the AF and ST clusters. (C) 2001 Academic Press.