Drosophila PIM and THR are required for sister chromatid separation in mito
sis and associate in vivo. Neither of these two proteins shares significant
sequence similarity with known proteins. However, PIM has functional simil
arities with securin proteins. Like securin, PIM is degraded at the metapha
se-to-anaphase transition and this degradation is required for sister chrom
atid separation. Securin binds and inhibits separase, a conserved cysteine
endoprotease. Proteolysis of securin at the metaphase-to-anaphase transitio
n activates separase, which degrades a conserved cohesin subunit, thereby a
llowing sister chromatid separation. To address whether PIM regulates separ
ase activity or functions with THR in a distinct pathway, we have character
ized a Drosophila separase homolog (SSE). SSE is an unusual member of the s
eparase family. SSE is only about one-third the size of other separases and
has a diverged endoprotease domain. However, our genetic analyses show tha
t SSE is essential and required for sister chromatid separation during mito
sis. Moreover, we show that SSE associates with both PIM. and THR. Although
our work shows that separase is required for sister chromatid separation i
n higher eukaryotes, in addition, it also indicates that the regulatory pro
teins have diverged to a surprising degree, particularly in Drosophila.