The standard Philadelphia (Ph) translocation t(9;22), its variants and a pr
oportion of Ph-negative cases are positive for the BCR-ABL fusion gene, as
determined by molecular analysis. Extensive deletions of chromosome 9 and 2
2 derived sequences around the translocation breakpoints on the derivative
9 are seen in 10-30% of patients at diagnosis and may confer a worse progno
sis. Additional cytogenetic changes can occur in the few months before or d
uring disease progression and are often specific for blast morphology; howe
ver, the molecular basis of the most common additional cytogenetic abnormal
ities is largely unknown. Cytogenetics is important for monitoring patient
response to treatment but is increasingly being replaced by the more sensit
ive and less invasive techniques of RT-PCR and FISH.