A novel transposon, MsqTc3-Aa, has been discovered in the yellow fever mosq
uito, Aedes aegypti. Evidence of its past mobility is presented. There are
approximately 100 copies of MsqTc3-Aa in A. aegypti, eight of which have be
en isolated and sequenced. All sequenced copies are more than 99% identical
to their consensus, indicating recent mobilization. The MsqTc3-Aa consensu
s contains imperfect terminal inverted repeats (TIRs) and an open reading f
rame (ORF) interrupted by an intron. Sequence, structural and phylogenetic
analysis showed that MsqTc3-Aa is a distant relative of Tc3, an active tran
sposon in Caenorhabditis elegans. These results may provide useful informat
ion for the current effort to control mosquito-borne diseases using genetic
approaches.