Phase variation is the adaptive process by which bacteria undergo frequent
and reversible phenotypic changes resulting from genetic alterations in spe
cific loci of their genomes. This process is crucial for the survival of pa
thogens and commensals in hostile and ever-changing host environments. Desp
ite important differences in the molecular mechanisms that mediate and regu
late phase variation, related strategies have evolved to generate high leve
ls of genetic diversity through complex and combinatorial reshuffling of ge
netic information. Recent studies, supported by the emergence of global gen
omic approaches, have revealed that bacterial pathogens often use a combina
tion of different mechanisms to vary the expression of a variety of biologi
cal functions, providing new insights into bacterial adaptation and virulen
ce mechanisms. Recent advances in the understanding of the molecular mechan
isms of phase variation are reviewed, and differences in these mechanisms o
utlined.