Rab9 GTPase is required for the transport of mannose 6-phosphate recep
tors from endosomes to the trans-Golgi network in living cells, and in
an in vitro system that reconstitutes this process. We have used the
yeast two-hybrid system to identify proteins that interact preferentia
lly with the active form of Rab9. We report here the discovery of a 40
-kD protein (p40) that binds Rab9-GTP with roughly fourfold preference
to Rab9-GDP, p40 does not interact with Rab7 or K-Ras; it also fails
to bind Rab9 when it is bound to GDI. The protein is found in cytosol,
yet a significant fraction (similar to 30%) is associated with cellul
ar membranes. Upon sucrose density gradient flotation, membrane-associ
ated p40 cofractionates with endosomes containing mannose 6-phosphate
receptors and the Rab9 GTPase. p40 is a very potent transport factor i
n that the pure, recombinant protein can stimulate, significantly, an
in vitro transport assay that measures transport of mannose 6-phosphat
e receptors from endosomes to the trans-Golgi network. The functional
importance of p40 is confirmed by the finding that anti-p40 antibodies
inhibit in vitro transport. Finally, p40 shows synergy with Rab9 in t
erms of its ability to stimulate mannose 6-phosphate receptor transpor
t, These data are consistent with a model in which p40 and Rab9 act to
gether to drive the process of transport vesicle docking.